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Frontiers in Veterinary Science

Frontiers Media SA

All preprints, ranked by how well they match Frontiers in Veterinary Science's content profile, based on 30 papers previously published here. The average preprint has a 0.04% match score for this journal, so anything above that is already an above-average fit. Older preprints may already have been published elsewhere.

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Risk factors associated with canine overweightness and obesity in an owner-reported survey

Perry, L. M.; Shmalberg, J.; Tanprasertsuk, J.; Massey, D.; Honaker, R. W.; Jha, A. R.

2020-01-07 bioinformatics 10.1101/2020.01.06.896399 medRxiv
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BackgroundOverweightness and obesity in dogs are associated with negative health outcomes. A better understanding of risk factors associated with canine weight is fundamental to identifying preventative interventions and treatments. In this cross-sectional study, we used a direct to consumer approach to collect body condition scores (BCS), as well as demographic, diet, and lifestyle data on 4,446 dogs. BCS was assessed by owners using a 9-point system and categorized as ideal (BCS 4-5), overweight (BCS 6), and obese (BCS 7+). Following univariate analyses, a stepwise procedure was used to select variables which were included in multivariate logistic regression models. One model was created to compare ideal to all overweight and obese dogs, and another was created to compare ideal to obese dogs only. We then used Elastic Net selection and XGBoost variable importance measures to validate these results. ResultsOverall, 1,480 (33%) of dogs were reported to be overweight or obese, of which 356 (8% total) of dogs were reported to be obese. Seven factors were significantly associated with both overweightness/obesity and obesity alone in all three analyses (stepwise, Elastic Net, and XGBoost): diet composition, probiotic supplementation, treat quantity, exercise, age, food motivation level, and pet appetite. Neutering was also associated with overweightness/obesity in all analyses. ConclusionsThis study recapitulated established risk factors associated with BCS (age, exercise, neutering). Moreover, we elucidated associations between previously examined risk factors and BCS (diet composition, treat consumption, and temperament) and identified a novel factor (probiotic supplementation). Specifically, relative to dogs on fresh food diets, BCS was higher in dogs eating dry food both alone and in combination with other foods. Furthermore, dogs receiving probiotics, but not other forms of supplementation, were more likely to have an ideal BCS. Future studies should corroborate these findings with experimental manipulations.

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Evaluating the efficacy of LUMPY-NIL herbal powder, dermal Spray and dermal ointment in treating Lumpy Skin Disease (LSD) in Bovines

Kumar, A. H.; Sagar, V.; BM, R.

2025-05-23 pharmacology and toxicology 10.1101/2025.05.22.655490 medRxiv
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BackgroundLumpy Skin Disease (LSD) lacks targeted treatment options and is managed using antibiotics and anti-inflammatory drugs. This study evaluated the efficacy of a polyherbal combination therapy in the management of LSD in affected bovines. Materials and Methods52 dairy cattle clinically diagnosed with LSD were enrolled in a field trial conducted under veterinary supervision. All animals received LUMPY-NIL Herbal Powder orally at 30 g twice daily, along with topical application of LUMPY-NIL Dermal Spray on closed nodules and LUMPY-NIL Ointment on open wounds. Daily monitoring included clinical signs, lesion progression, systemic symptoms, and milk yield recovery. ResultsTreatment duration varied from 7 to 21 days depending on severity of the disease. New lesion formation ceased within 2-4 days of treatment initiation. Systemic symptoms such as fever, lethargy, and inappetence resolved within 1-3 days. Open wounds showed progressive healing with no signs of infection, and nodules dried and sloughed off by day 15 in most animals. Milk yield showed partial recovery (20%) by day 7 and returned to baseline by day 15. The reduction in nodule size and number ranged from 81% to 94% by days 10-15. No adverse effects were observed during the treatment period. ConclusionThe polyherbal treatment combining demonstrated promising therapeutic benefits in managing clinical symptoms and accelerating recovery in LSD-infected cattle.

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Knowledge, attitudes, and practices of para-veterinary workers about ticks and tick-borne diseases in three provinces of Pakistan

Hussain, A.; Hussain, S.; Rajput, M.; Sajid, M. S.; Sparagano, O.; Mateus-Pinilla, N.; Smith, R. L.

2025-08-07 scientific communication and education 10.1101/2025.08.05.668794 medRxiv
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There is a high prevalence of tick infestation in Pakistani livestock, affecting more than 45% of the population of more than 200 million small and large ruminants. Most livestock farmers seek assistance from para-veterinary workers, who fall under the definition of Veterinary Paraprofessionals (VPPs), according to the World Organization for Animal Health (WOAH). There is a shortage of information concerning the awareness of these para-veterinary workers regarding tick control and management. This study aims to bridge this critical knowledge gap by conducting a cross-sectional survey that evaluates the knowledge, attitudes, and practices of para-veterinary workers about tick-borne diseases (TBDs) in Pakistan. Between March and August 2023, we conducted a web-based survey among para-veterinary workers recruited via email, text message, and face-to-face conversations. Poisson regression was used to identify factors associated with knowledge, attitude, and practice (KAP) scores related to TBDs. We received 118 responses from three provinces; only 27.9% (n = 33) responded that they had attended workshops related to ticks and TBDs. Attending workshops was associated with higher KAP scores. All section scores were correlated, and higher knowledge scores were significantly associated with lower odds of tick exposure. Our findings suggest that workshop attendance is important in increasing overall awareness and promoting better practices regarding TBDs.

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Are all vet schools equal? An exploration of postgraduate qualification attainment by alumni cohorts of seven UK veterinary schools.

Davies, P.; Corbishley, A.; Neary, J.

2026-01-06 scientific communication and education 10.64898/2026.01.03.697366 medRxiv
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Abstract & IntroductionDo graduates from the different vet schools attain clinical and academic postgraduate qualifications (certificates, diplomas, masters, PhD and Fellowship) at the same rates? This is important because leadership and progress within the veterinary profession, as in human medicine, comes from advancing the frontier of our knowledge through research and clinical specialisation. Postgraduate qualifications are essential training for both and are therefore useful metrics to measure. In this study the Royal College of Veterinary Surgeons annual registers of qualified vets from 2000-2021 were analysed. Significant and substantial differences in the proportion of graduates from different universities attaining postgraduate qualifications were observed. Whilst associations identified by this analysis cannot prove causation, they do strongly suggest the wide range of university-specific factors, such as student selection criteria, teaching methods, curriculum design and assessments which contribute to the culture and ethos of the institution have an impact on the career trajectory of their graduates.

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United States stakeholder insights on genetic testing for equine health and breeding

Mienaltowski, M. J.; Hernandez, S.; Nastrini, E.; Wickens, C. L.; McCue, M. E.; Patterson Rosa, L.; Norton, E. M.; McCoy, A. M.; Brooks, S. A.

2025-08-06 genetics 10.1101/2025.07.29.667538 medRxiv
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The S1094 United States Department of Agriculture (USDA) Multistate Research Project is a community of scientists working together to utilize equine genetics and genomics to improve the health and well-being of horses while also providing educational and genetic testing resources to those in the equine industry. To assess the knowledge and priorities of stakeholders regarding genetic testing, we conducted an online survey targeting horse owners and enthusiasts in the United States. Data were collected from March to October 2024 with 412 respondents from 44 states completing the survey. Most of the survey participants were horse owners, and the two most common age ranges for respondents were 31-50 (33.6%) and 51-70 (33.3%) years old. The two most common use categories for horses reported by respondents were sport and stock horses. The survey revealed that a majority of respondents were confident in their knowledge of genetics and that they relied primarily on breed and discipline organizations, as well as universities for their genetic information. Secondarily they relied upon social media and their veterinarians. Respondents expressed significant interest in genetic testing for diversity and performance traits. Across all horse use categories, arthritis, colic and intestinal disease, laminitis, metabolic disorders, and tendon and ligament issues had the greatest level of concern - all of which are complex genetic traits and will require collaborative efforts to discern levels of genetic involvement. Results from the survey underscore the need for continued outreach and education of horse owners, as well as further development of genetic testing tools to support informed decision-making among stakeholders in the equine industry. Lay SummaryGenetic testing helps horse owners, breeders, and breed registries and associations verify parentage, evaluate health, and improve performance. The S1094 USDA Multistate Research Project has a mission of improving genomics and genetics tools, as well as providing educational resources for those in the equine industry. To better understand the knowledge and priorities of stakeholders in the equine industry, we conducted an online survey netting responses from 412 individuals in the United States. Respondents were primarily horse owners who self-identified as confident in their knowledge of horse genetics. Furthermore, those responding indicated that their primary resources for information about genetics were breed and discipline association websites and universities. They also expressed interest in genetic testing for diversity and performance traits. Across all horse use categories, arthritis, colic and intestinal disease, laminitis, metabolic disorders, and tendon and ligament issues had the greatest level of concern. Given the complex nature of these conditions, collaborative efforts will be required to discern levels of genetic involvement. Respondents felt that genetic testing and education efforts have significant impacts on the equine industry because they aid owners in making breeding decisions and in the management of horse health and well-being. Teaser TextThis nationwide survey of U.S. horse owners discerned strong stakeholder interest in equine genetic testing, determined sources for knowledge acquisition, and highlighted key priorities for the development of genetic tools and educational materials.

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Allogenic platelet-rich plasma and platelet-rich plasma extracellular vesicles alter the proteome of tenocytes in an in vitro equine model of tendon inflammation: A pilot study

Clarke, E.; Jensen, A.; Gillen, A.; Bardell, D.; Senior, M.; Anderson, J. R.; Peffers, M. J.

2024-08-28 molecular biology 10.1101/2024.08.27.609926 medRxiv
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BackgroundTendon injuries are common in horses, often resulting in a high risk of reinjury. Hemoderivative therapeutics including platelet-rich plasma (PRP) show promise but outcomes vary due to inconsistent composition. PRP is rich in soluble growth factors and extracellular vesicles (EVs), the latter facilitate cell-to-cell communication by delivering biologically active cargo. This pilot study profiled the proteome of PRP and PRP-derived EVs and examined their effects on an equine tendon inflammatory model in vitro. MethodsPlasma was isolated via double centrifugation and PRP produced using a commercial filtration kit. EVs were isolated from PRP and plasma using differential ultracentrifugation and characterised with the Exoview Tetraspanin assay. Equine tenocytes were stimulated with interleukin 1{beta} and tumor necrosis factor , then treated with PRP or PRP-derived EVs. Proteomic analysis was conducted on cell lysates, PRP and PRP-EVs using data-dependent acquisition liquid chromatography-tandem mass spectrometry and the data analyzed using multivariate and univariate approaches. ResultsPRP contained 575 quantifiable proteins and PRP-derived EVs 209 proteins. When compared to plasma and plasma derived EVs respectively, PRP and PRP-EVs were enriched in proteins associated with cellular waste disposal and inhibition of lipid metabolism. Experimental factors (inflammatory stimulation and/or treatments) significantly affected the abundance of 18 proteins as expressed in equine tenocytes including col1a1 (col1a1) and sequestosome 1, associated with collagen metabolism and nuclear factor kappa B signaling. DiscussionThe findings from this study suggest PRP-derived EVs influence inflammatory tenocytes and may be crucial to the efficacy of PRP.

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Establishment and characterization of mammary organoids from non-traditional model organisms

Bartlett, A. P.; Van de Walle, G. R.

2021-01-15 cell biology 10.1101/2021.01.15.426833 medRxiv
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Mammary organoid (MaO) models are only available for a few traditional model organisms, limiting our ability to investigate mammary gland development and cancer across the diverse taxa of mammals. For example, horses are mammals with a similar mammary anatomy and function as humans, but they have a remarkably low incidence of mammary cancer, making the development of MaOs in non-traditional model organisms attractive, particularly in comparative cancer research. This study established equine mammary organoids (EqMaOs) from mammary gland tissue fragments and evaluated parameters including diameter, budding, and growth stage in non-budding EqMaOs, in cultures with increasing concentrations of epidermal growth factor (EGF), a key growth factor implicated in mammary gland development. Our findings showed that EqMaO diameter is not influenced by EGF concentration, whereas number of EqMaOs with budding and stage in non-budding EqMaOs are positively influenced by increasing EGF concentration. EqMaOs also formed protrusions with putative functions, including organoid fusion and sensory functions. We further characterized EqMaOs by the presence of myoepithelial and luminal cells using immunohistochemistry and used the hormone prolactin to stimulate milk secretion, as illustrated by {beta}-lactoglobulin expression, in these EqMaOs. Additionally, we showed that our method to establish MaOs is widely applicable to additional non-traditional mammalian model organisms such as cat, pig, deer, rabbit, and prairie vole. Collectively, MaO models across species will be a useful tool for comparative developmental and cancer studies. Summary statementMammary organoids can be established from various mammals by embedding mammary tissue fragments into a 3D matrix, providing a high-throughput, physiologically accurate model for comparative studies centered on mammary gland development and cancer.

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Finding Expression of MUC1 and MUC4 in the Respiratory System of the Iraqi Common Quail (Coturnix coturnix)

AL-Mamoori, N. A. M.; Almhanna, H.; Kadhim, A. B.; Kilroy, D.; Kumar, A.

2023-09-02 molecular biology 10.1101/2023.09.01.555941 medRxiv
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BackgroundThis study focused on the major components of mucus, known as mucins, within the mucosal epithelium of the respiratory system in Iraqi Common Quail. Six quail were utilized in accordance with animal ethics guidelines from the College of Veterinary Medicine at the University of Al-Qadisiyah. Histological analysis, utilizing H&E staining, aimed to identify key respiratory system structures. PAS plus Alcian blue stains were employed to identify specific carbohydrates in the trachea, bronchi, and lungs. RT-qPCR was used to assess the gene expression levels of MUC1 and MUC4. ResultsThe trachea and bronchi encompassed four distinct layers: tunica mucosa, tunica submucosa, hyaline cartilage, and tunica adventitia. The mucosa consisted of pseudostratified epithelium that transitioned into simple columnar cells toward the primary and secondary bronchioles. This transition further progressed into simple cuboidal and squamous epithelium at smaller tertiary branches of the secondary bronchioles. Notably, the bronchial tunica submucosa was thinner than the trachea. While hyaline cartilage was prominently present in the trachea, it became fragmented in the bronchi and diminished towards the lungs and secondary bronchioles. Lung tissue was characterized by numerous lobules housing alveoli connected to alveolar ducts and sacs, alongside an intricate network of blood vessels. The respiratory tissues, including the trachea, bronchi, and lungs, exhibited a strong affinity for PAS-combined Alcian blue stains. This confirmed the substantial presence of both acidic and neutral mucins within the epithelial cells and glands. The trachea demonstrated significantly elevated levels of acidic mucins and a concentrated amount? of neutral mucins. Transcriptome analysis indicated the expression of both MUC1 and MUC4 genes. Importantly, MUC4 expression surpassed that of MUC1 in the trachea, bronchi, and lungs. ConclusionThis study highlights the similarity of histological structures in the trachea, bronchi, and lungs of quail to typical avian species. Moreover, it underscored the substantial presence of both acidic and neutral mucins, with MUC4 being the predominant mucin, potentially playing a pivotal role in regulating mucosal barrier functions and interacting with pathogens. Nonetheless, further investigation is warranted to elucidate MUC4s role in respiratory epithelial cells.

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A microRNA-based Johne's disease diagnostic predictive system: preliminary results

Capewell, P.; Lowe, A.; Athanasiadou, S.; Wilson, D.; Hanks, E.; Coultous, R.; Hutchings, M. R.; Palarea-Albaladejo, J.

2023-07-09 bioinformatics 10.1101/2023.07.07.548088 medRxiv
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BackgroundJohnes disease, caused by Mycobacterium avium subsp. paratuberculosis (MAP), is a chronic enteritis impacting welfare and productivity in cattle. Screening and animal removal are common for disease management, but efforts are hindered by low diagnostic sensitivity. Expression levels of small non-coding RNA molecules involved in gene regulation (microRNAs) altered during mycobacterial infection may present an alternative diagnostic method. MethodsLevels of 24 microRNAs affected by mycobacterial infection were measured in sera from MAP-positive (n=66) and MAP-negative samples (n=65). They were used to train a collection of statistical and machine learning models to identify an optimal classifier for diagnosis. ResultsThe best-performing model provided 72% accuracy, 78% AUC, 73% sensitivity and 71% specificity on average. LimitationsAlthough control samples were collected from farms nominally MAP-free, low sensitivity in current diagnostics means animals may be misclassified. ConclusionMicroRNA profiling combined with advanced predictive modelling techniques accurately diagnosed Johnes disease in cattle.

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Estimating the societal disease burden of East Coast fever among rural cattle keeping households of Namwala District, Zambia

Mwila, N.; Mumba, C.; Salih, O.; Sichibalo, K.; Simulundu, E.; Changula, K.; Chitanga, S.

2021-01-28 scientific communication and education 10.1101/2021.01.28.428585 medRxiv
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The study aimed to estimate the disease burden of East Coast fever (ECF) among rural cattle keeping households of Namwala District of Zambia using Productivity Adjusted Life Years (PALYs). We modified Disability Adjusted Life Year (DALY) equations for humans to PALYs to estimate the societal burden of animal diseases. We used a structured questionnaire to collect data on parameters that feed into PALY equations. We coded and entered data from questionnaires directly into Statistical Package of Social Sciences (IBM SPSS Version 20), and entered the estimated values of PALY parameters into Mathematical Calculus Software called Integral Calculator (https://www.integral-calculator.com/). We then used the integral calculator to calculate PALY equations, which we used to estimate the societal disease burden of ECF in cattle. PALYs calculations were done in three categories; PALYs without discounting and age weighting, PALYs with only discounting, and PALYs with discounting and age weighting. Results revealed that the years of productivity lost by a cow, bull, and ox that suffered from ECF were estimated at 15, 10, and 15 years, respectively. In the second category, the years of productivity lost by a cow, bull, and ox were seven, six, and seven years, respectively. In the final category, the years of productivity lost by a cow, bull, and ox were five years. ECF caused a total of 517,165 PALYs in Namwala District. The quality of life reduced in years due to disability (YLD) caused by ECF per cow, bull, and ox was 0.07, 0.07, and 0.02 percent of their life expectancy, respectively. The estimated values for the years of a lifetime lost due to mortality (YLL) caused by ECF were 35, 49, and 35 percent of the life expectancy per cow, bull, and ox. These results are important for measuring outcomes of animal health problems in terms of PALYs. The findings are helpful in future projections for the future burden of any disease and can be used as a basis in policy-making and decision-making, particularly on priorities in animal health research. We recommend that a classification of animal diseases of national economic importance should consider both the societal burden and economic impact instead of the common practice of only considering the economic impact.

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Knowledge, Attitudes and Practices on Antimicrobial Resistance Among Practising Veterinary and Para-veterinary Professionals in Zambia

Mwape, T.; Dewe, T. C. M.; Sitali, D.; Nyakarahuka, L.; Gilbert, C.; Pyatt, A.; Muma, J. B.; Mumba, C.

2025-08-16 scientific communication and education 10.1101/2025.08.14.670270 medRxiv
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In this study, we aimed to assess the knowledge, attitudes, and practices (KAP) of veterinary and para-veterinary professionals concerning antimicrobial resistance (AMR), in order to identify key drivers of inappropriate antimicrobial use and gaps in current stewardship efforts. Data was collected from a cross-sectional survey of 144 veterinary and para-veterinary professionals (n=144) using an online structured self-administered questionnaire in ZOHO software. We analyzed data using descriptive statistics and logistic regression in IBM SPSS Statistics Version 25. The findings revealed a high foundational knowledge of AMR, with 66.7% correctly defining AMR. The majority of respondents (82%) acknowledged that overuse of antimicrobials reduces their effectiveness and expressed strong support for mitigation efforts, with 95.8% endorsing farmer education as a key strategy. However, significant gaps in practice persisted: 75% of animal owners frequently initiated antibiotic use without supervision; professionals largely relied on empirical treatment (62.5%); and only 20.8% of professionals routinely performed antimicrobial susceptibility testing (AST), due to barriers like cost and laboratory accessibility. Logistic regression analysis revealed no significant associations between socio-demographic variables and levels of AMR knowledge or attitudes. This suggests that barriers to responsible antimicrobial use may be more structural than individual. We conclude that while Zambian practicing veterinary and para-veterinary professionals possess strong AMR awareness and positive attitudes, risky practices do persist. We recommend strengthening AMR stewardship with a holistic One Health approach by improving veterinary services to promote more appropriate and effective antimicrobial use. Author SummaryAntibiotics are essential for treating sick animals, but their misuse can lead to antimicrobial resistance, where bacteria no longer respond to the drugs meant to kill them. This problem threatens both animal and human health. In Zambia, veterinary and para-veterinary professionals are actively involved in administering treatments and supporting decisions related to antibiotic use in livestock and pets. We wanted to understand what these professionals know, believe, and do when it comes to using antibiotics responsibly. To find out, we surveyed 144 veterinary and para-veterinary professionals from across the country. We learned that most of them were aware that misuse of antibiotics can make treatments less effective and that drug-resistant bacteria can spread between animals and people. Many also supported educating farmers and working with human health experts to tackle the issue. However, we also discovered that antibiotics were often used in animals without proper testing or diagnosis, mainly because of limited laboratory access and cost concerns. Our findings show that while knowledge and attitudes are strong, actual practices need improvement. We believe improved access to diagnostic services, more explicit rules, and ongoing training can help veterinary and veterinary paraprofessionals protect both animal and public health from the growing threat of antibiotic resistance.

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Prevalence and risk factors of ovine and caprine fasciolosis in Ethiopia: a systematic review and meta-analysis

Endalamew, S. G.; Wassie, A. T.; Assefa, A. Y.; Ambaw, Y. G.; Ayalew, S. M.; Assefa, S. K.

2025-04-24 scientific communication and education 10.1101/2025.04.23.650175 medRxiv
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BackgroundFasciolosis is a parasitic disease caused by liver flukes of the genus Fasciola, predominantly Fasciola hepatica and Fasciola gigantica. This zoonotic disease significantly impacts both livestock and human populations, particularly in areas with extensive agriculture and poor sanitation. Ethiopia, one of the Africas leading ovine and caprine producers, is highly affected by fasciolosis. However, despite its economic and public health importance, there is a lack of comprehensive up-to-date evidence on prevalence and risk factors of small ruminant fasciolosis. Therefore, this systematic review and meta-analysis aims to explore the pooled prevalence of fasciolosis among small ruminants (ovine and caprine) in Ethiopia. MethodsThis systematic review and meta-analysis were conducted based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. A comprehensive systematic review was performed across five electronic databases (Google Scholar, Embase, PubMed, Web of Science, and ScienceDirect), with all database searches and registers inquiries finalized on November 26, 2024. A random-effect model was used to determine the pooled prevalence of fasciolosis in ovine and caprine. Heterogeneity was assessed, and the source of variation was analyzed using subgroup and sensitivity analysis. Publication bias assessment and meta-regression analysis were also performed to ensure the robustness of the review. Funnel plots and Eggers asymmetry tests were used to investigate publication bias. ResultsOverall, 33 studies were included in the meta-analysis, and the pooled prevalence of fasciolosis in ovine and caprine was 32.25% (95% CI: 25.97-38.86%). This study revealed substantial between-study heterogeneity (inconsistency index (I2)) = 97.3%, p < 0.0001). Among the variables analyzed for heterogeneity, species, publication years, season of data collection, and regions of the study were the most significant predictors of heterogeneity The sub-group analysis showed that the prevalence of fasciolosis among ovine and caprine was 37.18% (95% CI; 31.06-43.51%) and 12.76% (95% CI; 4.06-25.19%), respectively. According to the region-based subgroup meta-analysis, studies taken from Amhara region had the highest prevalence of fasciolosis among small ruminants (43.99% (95% CI: 31.83-56.52%)). ConclusionThis systematic review and meta-analysis emphasize fasciolosis as a pervasive threat to Ethiopian small ruminants. Policymakers, healthcare providers, and communities should collaborate to integrate robust prevention mechanisms for the disease, establishing standardized protocols for Fasciola monitoring, reporting, and mitigation.

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Leveraging artificial intelligence and software engineering methods in epidemiology for the co-creation of decision-support tools based on mechanistic models

Picault, S.; Niang, G.; Sicard, V.; Sorin-Dupont, B.; Assie, S.; Ezanno, P.

2023-09-04 bioinformatics 10.1101/2023.09.03.555060 medRxiv
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Epidemiological modelling is a key lever for infectious disease control and prevention on farms. It makes it possible to understand the spread of pathogens, but also to compare intervention scenarios even in counterfactual situations. However, the actual capability of decision makers to use mechanistic models to support timely interventions is limited. This study demonstrates how artificial intelligence (AI) techniques can make mechanistic epidemiological models more accessible to farmers and veterinarians, and how to transform such models into user-friendly decision-support tools (DST). By leveraging knowledge representation methods, such as the textual formalization of model components through a domain-specific language (DSL), the co-design of mechanistic models and decision-support tools becomes more efficient and collaborative. This facilitates the integration of explicit expert knowledge and practical insights into the modelling process. Furthermore, the utilization of AI and software engineering enables the automation of web application generation based on existing mechanistic models. This automation simplifies the development of DST, as tool designers can focus on identifying users needs and specifying expected features and meaningful presentations of outcomes, instead of wasting time in writing code to wrap models into web apps. To illustrate the practical application of this approach, we consider the example of Bovine Respiratory Disease (BRD), a tough challenge in fattening farms where young beef bulls often develop BRD shortly after being allocated into pens. BRD is a multi-factorial, multi-pathogen disease that is difficult to anticipate and control, often resulting in the massive use of antimicrobials to mitigate its impact on animal health, welfare, and economic losses. The decision-support tool developed from an existing mechanistic BRD model empowers users, including farmers and veterinarians, to customize scenarios based on their specific farm conditions. It enables them to anticipate the effects of various pathogens, compare the epidemiological and economic outcomes associated with different farming practices, and decide how to balance the reduction of disease impact and the reduction of antimicrobial usage (AMU). The generic method presented in this article illustrates the potential of artificial intelligence (AI) and software engineering methods to enhance the co-creation of decision-support tools based on mechanistic models in veterinary epidemiology. The corresponding pipeline is distributed as an open-source software. By leveraging these advancements, this research aims to bridge the gap between theoretical models and the practical usage of their outcomes on the field. HighlightsO_LIAI make mechanistic epidemiological models usable to support decisions on farms C_LIO_LITextual knowledge representation fosters co-design of mechanistic models and tools C_LIO_LIAI and software engineering automate web app generation to ease disease control C_LI

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The Testing of Copper Intrauterine Devices to Mitigate Uterine Infections in Mares: A Preliminary Study

Gradil, C.; Jennette, A.; Becker, K.; Haire, T.; Joone, C.; Leibstein, M.; Minter, L.

2024-11-01 microbiology 10.1101/2024.11.01.621471 medRxiv
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This preliminary study evaluated the effectiveness of a novel hormone- and drug-free copper intrauterine device POD (CuiUPOD) with one to three copper-coated magnetic units in controlling Streptococcus equi subsp. zooepidemicus in seven intrauterine-inoculated mares. Initially, one unit was inserted into each mare and animals were followed weekly with trans-rectal ultrasonography, blood progesterone assay, uterine swabs for cytology and microbial culture, uterine specimens for biopsy, and trans-abdominal detection of the CuiUPOD using a handheld magnetic detector or a cell phone compass. Infection persisted after a CuiUPOD with one magnetic unit was inserted, but subsided shortly after two additional magnetic units were added. By day 60, at device removal, and after a 30-day exposure to copper, none of the mares presented with clinical signs of infection. On a scale of I-III (I, IIA, IIB, III), with I representing a healthy uterus, endometrial biopsies at the time of CuiUPOD removal, showed improved biopsy scores in two of seven mares (29%; p < 0.05). The in vivo experiments, complemented by an in vitro experiment, demonstrated a time- (24-96 hours) and dose-dependent response to Cu: three CuiUPODs - OD readings = 0.538; two CuiUPODs - OD = 0.513; and one CuiUPOD - OD = 0.452. As the concentration of copper increased, so did the antimicrobial effect. These findings suggest a promising use for the one-time application of a CuiUPOD with two or three magnetic units to mitigate uterine infections in mares. Simple SummaryOnly a limited number of antimicrobials are effective against most resistant bacteria. Several studies have demonstrated the biocidal effect of copper on bacteria, fungi, and viruses. Copper-containing intrauterine devices provide a non-pharmacological solution to prevent and treat uterine infections in equids. This preliminary study provides evidence of the antimicrobial properties of copper both in vivo and in vitro and explores its possible application in mare reproductive practice. A 30-day intrauterine exposure to copper showed no clinical signs of infection with a common bacterium in horses - Streptococcus equi subsp. zooepidemicus - in intrauterine-inoculated mares. As the concentration of copper increased, so did the antimicrobial effect. Copper intrauterine devices show promise in mitigating uterine infections in mares.

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Comparative analysis of cattle breeds as satellite cell donors for cultured beef

Melzener, L.; Ding, S.; Hueber, R.; Messmer, T.; Zhou, G.; Post, M. J.; Flack, J. E.

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BackgroundCultured meat is a promising new field with the potential for considerable environmental and animal welfare benefits. One technological approach to cultured meat production utilises the proliferative and differentiative capacity of muscle-derived satellite cells (SCs) to produce large volumes of cultured muscle tissue from small biopsies of donor animals. Differing genotypes between cattle breeds lead to predictable phenotypic traits, resulting in breeds being favoured for their respective meat or milk production characteristics in the livestock industry. However, whilst these breeds show significant differences in muscle growth, it is unclear whether the physiological differences observed between them in vivo are reflected in differences in SC behaviour in vitro, particularly with respect to proliferation, differentiation and cellular longevity, and hence whether particular breeds might represent preferred SC donors for a cultured beef bioprocess. ResultsComparing SCs isolated from five breeds (Belgian Blue, Holstein Friesian, Galloway, Limousin and Simmental), we found that the proliferation rates were largely unaffected by the donor breed. In contrast, potentially meaningful differences were observed in the kinetics and extent of myogenic differentiation. Furthermore, whilst differentiation dropped for all breeds with increasing population doublings (PDs), SCs from Belgian Blue and Limousin cattle showed significantly longer retention of differentiation capacity over long-term passaging. ConclusionSCs from all breeds were able to proliferate and differentiate, although Limousin and (particularly) Belgian Blue cattle, both breeds commonly used for traditional meat production, may represent preferred donors for cultured beef production.

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Gastrointestinal ulceration in calves presented to a central Iowa veterinary referral facility: An underappreciated morbidity?

Mosichuk, A. P.; Smith, J.; Tatarniuk, D.; Kreuder, A.

2020-12-18 pathology 10.1101/2020.12.17.423269 medRxiv
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Summary and ImplicationsThe objective of this retrospective investigation is to identify the incidence of gastrointestinal ulceration as a co-morbidity in calves presenting to a referral veterinary hospital. Approximately 24% of calves presented to the hospital that died or were euthanized had evidence of gastrointestinal ulceration. Previous administration of an NSAID was significantly associated with the presence of ulcers, whereas antibiotic administration, age at presentation, gender, or breed were not. Clinicians and producers should consider the risk of ulceration in calves treated with NSAIDs, in light of antiulcer therapies.

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Survival time and prognostic factors in dogs diagnosed with haemangiosarcoma in UK first opinion practice

Taylor, C.; Barry, G.; O'Neill, D.; Guillen, A.; Pickard Price, P.; Labadie, J.; Brodbelt, D.

2024-12-14 pathology 10.1101/2024.12.07.627327 medRxiv
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AbstractVisceral haemangiosarcoma is considered clinically aggressive in dogs, with perceived poor prognosis often leading to euthanasia at presentation. This study aimed to determine survival times and prognostic factors in dogs with haemangiosarcoma under first-opinion care. Dogs diagnosed with haemangiosarcoma in first-opinion practice in 2019 were identified in VetCompass electronic health records (EHRs) and manually examined to capture variables potentially associated with survival. Median survival time (MST) from diagnosis was calculated for the whole population and based on the primary tumour location. Binary logistic regression was used to explore differences between dogs that died on the day of diagnosis and those that survived [&ge;]1 day. Cox proportional hazards modelling explored factors associated with time to death in dogs that survived [&ge;]1 day. Across all haemangiosarcoma cases (n=788), overall MST was 9.0 days (95%CI:5.0-15.0, range: 0-1789) and proportional 1-year survival was 12.0% (95%CI:9.7-15.0%). Dogs with splenic (MST=4.0 days, 95%CI 0.0-9.0) and cutaneous haemangiosarcoma (MST=119.0 days,95%CI:85.0-248.0) had MST greater than 0 days. Male sex and increasing tumour size were associated with increased hazard of death while cutaneous location and surgery were associated with reduced hazard of death. A very short survival time was identified for haemangiosarcoma under first-opinion care. Although survival time was longest for cutaneous cases, the actualised prognosis was poor overall for haemangiosarcoma. This study provides valuable information for contextualised care and dialogues with clients in first-opinion practice.

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Profiling of bacterial communities associated with periodontal disease severity in dog subgingival plaque

WATANABE, A.; OKADA, J.; NIWA, R.; INUI, Y.; ITO, K.; SHIMOKAWA, Y.; KIHIRA, M.

2023-09-14 microbiology 10.1101/2023.09.13.557668 medRxiv
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BackgroundPeriodontal disease (PD) is a common oral disease in dogs and humans. Dogs have distinctly different oral environments from humans. Although common bacteria are observed in both species, profiling of the causative bacteria for the progression of PD in dogs is limited compared to humans. ResultsOur study examined the shifts in the bacterial community within canine plaque as PD intensifies, analyzing plaque samples from 48 dogs at various PD stages. Additionally, we examined the impact of a tooth-brushing regimen using a dental gel on twelve dogs. We revealed a correlation between the age of the dogs and the severity of PD. As PD advanced, we noted a marked increase in Porphyromonas abundance, a key pathogenic genus. Conversely, Conchiformibius prevalence diminished in higher PD levels. Furthermore, a regimen of two week brushing with a dental gel resulted in a notable decrease in Porphyromonas levels and five of the twelve dogs improve severity. ConclusionsOur findings suggest the potential efficacy of daily brushing with dental gels, incorporating compounds proven effective in humans, for managing PD in dogs. This study demonstrates a distinct disease progression in dogs compared to humans, underscoring the need for continued research and innovation in veterinary oral healthcare.

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Sero-prevalence and risk factors of leptospirosis in commercial cattle herds of Rupandehi district, Nepal

Gompo, T. R.; Jyoti, S.; Pandit, S.; Sapkota, R. C.; Pandey, A.

2020-07-29 scientific communication and education 10.1101/2020.07.29.226464 medRxiv
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Nepal has an agrarian-based economy where the livestock sector contributes about 12 percent to the national GDP. Rupandehi district is one of the largest dairy pocket areas in the nation, but the disease, such as leptospirosis, posed a negative impact on their production and productivity. Despite the economic importance of cattle leptospirosis, the disease is concerned for the peoples occupational risk and food safety. Although leptospirosis is a priority zoonosis in Nepal, the effective implementation of the control program lacks both in animal and human health. A cross-sectional study was conducted to estimate the prevalence and identify associated risk factors of cattle leptospirosis from March 2019 to April 2020. Altogether, 206 cattle herds located in all the sixteen local levels of the district were visited. The owners were interviewed to record the cattle management systems information and their knowledge of the zoonotic diseases. A total of 383 cattle serum samples were collected, and an indirect antibody ELISA was performed to estimate the infection status of leptospirosis in the cattle herds. All the data were analyzed by Open epi and R software for the descriptive and analytical study. Bivariate and multivariable logistic regression was applied to assess the potential herd level and animal level risk factors. Out of seven potential herd-level risk factors, the purchased cattle herds (OR: 7.2, 95% CI: 1.24-136.5, p=0.025) and cattle with herd size >10 (OR: 14.92, 95% CI: 2.61-283.38, p=0.025) were identified as significant risk factors for leptospirosis. At the animal level, the cattle taken for grazing in pastureland accessed by the community dog was a significant risk factor (OR: 4.16, 95% CI: 1.13-14.06, p=0.034). Surprisingly, none of the farmers had heard about leptospirosis before. The outcome of this research could be an epidemiological insight in control of priority zoonosis to protect the livestock economy and reduce their negative impact on public health.

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Targeted next-generation sequencing of Candidate Regions Identified by GWAS Revealed SNPs Associated with IBD in GSDs

Peiravan, A.; Salavati, M.; Psifidi, A.; Sharman, M.; Kent, A.; Watson, P.; Allenspach, K.; Werling, D.

2021-04-21 genetics 10.1101/2021.04.20.440584 medRxiv
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Canine Inflammatory bowel disease (IBD) is a chronic multifactorial disease, resulting from complex interactions between the intestinal immune system, microbiota and environmental factors in genetically predisposed dogs. Previously, we identified several single nucleotide polymorphisms (SNP) and regions on chromosomes (Chr) 7, 9, 11 and 13 associated with IBD in German shepherd dogs (GSD) using GWAS and FST association analyses. Here, building on our previous results, we performed a targeted next-generation sequencing (NGS) of a two Mb region on Chr 9 and 11 that included 14 of the newly identified candidate genes, in order to identify potential functional SNPs that could explain these association signals. Furthermore, correlations between genotype and treatment response were estimated. Results revealed several SNPs in the genes for canine EEF1A1, MDH2, IL3, IL4, IL13 and PDLIM, which, based on the known function of their corresponding proteins, further our insight into the pathogenesis of IBD in dogs. In addition, several pathways involved in innate and adaptive immunity and inflammatory responses (i.e. T helper cell differentiation, Th1 and Th2 activation pathway, communication between innate and adaptive immune cells and differential regulation of cytokine production in intestinal epithelial cells by IL-17A and IL-17F), were constructed involving the gene products in the candidate regions for IBD susceptibility. Interestingly, some of the identified SNPs were present in only one outcome group, suggesting that different genetic factors are involved in the pathogenesis of IBD in different treatment response groups. This also highlights potential genetic markers to predict the response in dogs treated for IBD.